PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_003591
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 1714aa    MW: 189600 Da    PI: 9.4471
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_003591genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.14.9e-0615841605627
                   -SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH    6 CrffartGtCkyGdrCkFaHgp 27  
                   C+ + +tG+C+ G++Ck +H++
  DCAR_003591 1584 CPKYEETGICPQGSQCKLHHPK 1605
                   *****************99985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.86814741503IPR000571Zinc finger, CCCH-type
SMARTSM003560.005214741502IPR000571Zinc finger, CCCH-type
SMARTSM003562215031527IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.6215291555IPR000571Zinc finger, CCCH-type
SMARTSM003560.1415291554IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.63415561577IPR000571Zinc finger, CCCH-type
SMARTSM003562.615561582IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.9215781606IPR000571Zinc finger, CCCH-type
SMARTSM003560.215831605IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043484Biological Processregulation of RNA splicing
GO:0060149Biological Processnegative regulation of posttranscriptional gene silencing
GO:0016607Cellular Componentnuclear speck
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1714 aa     Download sequence    Send to blast
MEFNQFDHNR YVSHPPHHHR DAHRHHLPPP PPFHLPPPPP PLYPSLPPPP PPPPPPRHSD  60
FTFVNSSPRV SSGRLPEPYP VTRPDLARGS GGYNCESDYN SGGYESIDGY RDGNCNVNVN  120
RNRSQSQRSL WNGKNDDVVN YEGYGYSESR NSGFRVDNRE NSNYESRYVN VLRNERLLDE  180
RSKNWRSVDM ERNRNDIDLV RCVKERERER ERERERERIS FREREEEENF CTPQKKSVLL  240
RIGKPNEVRN SRSYEKNLSG SRGKDKAKAK EKERDRVVFP KFRLEDERER SPVDLDVSFR  300
SNGLVAKTIV TENGSPGKRY TPRSRKGRRK NAFYSPLTKV VEPSVWLGGS SHLRDSPSSC  360
EKTPMKVENN TDSGTVRMVR SSADTSSGET PEKVEYGLVS GGASETKSAG SREMKRCVQD  420
TVSDRSPKRS GFCESPSYRT RKKKKVASVI LHASDLELKK ESEDVTLNDS THIPHSPIQG  480
LMHMDKKISS VFIKNDDIVS LPSPVGLDVN NLDAVPQTIA SDMNNVTDYS GRSTLPNSTT  540
NSSLHLLDPL LPQESELEKD TSIAKMYVSV LDNVGTESEN DFTLSGISRE NDDTKEPPKS  600
GNCPSLEDGL CNRSSEGIMV SSIDFGFRST TVSNIDLIDA GAKQSAAIEN SNLLQADIEE  660
ACLDAANINI ELSKADADKV NDGTVNEHSF NCSPSSPSSS NFAITIGGEN IVSCPVDDTG  720
NQISHTETTI HVNTLVGDCL KAEVPTVGNV EVCSGMDYTS NGMKRKRFTR QNQSYLSSTK  780
TCDKQVKVVT QSLDEDNVIS CSVKDGSGAE NLHAAHQNVK DRGISAQGSV PNEIFLEVGI  840
VRTGTDVDLE GASPIKKIKV LHNDEKIVSG DGDGAALTPN KSLNNLEEER KELVHDKFIN  900
TNDASIPSQD TNTTIEALKP IKGDLALTRK KPTSAVPRVF TSPLSLHLSN SKRATPSNHN  960
AKSLSWHRPA TVIASAPASK TFSPPVSASK KSPRKAGKVQ GSSYIRKGNS LVRKPSTVSA  1020
IPYSSYASTV YRLNSSGKDD IRKSSGSGNK IGTNGSASWL RTRDGDENHK SSRSESIGVI  1080
AGSASQLITG GLSEGPKTLP LPQINKSKES TGGLVATSEG PKTPPLPQIN RSKDSIAIHA  1140
GDCTPSLLGN IPSDSSEASS TPLQQTSNVD ITNILEDDPK LSGTSEYRAG VESNFGNEML  1200
LDKGKAGGKI TYVKRKSNQL IATRNVNEMS NQAADKIQVL PSDSYYKRRR NQLIRASTDN  1260
QAMPREVPHS NAKGRTGGSL SKQHFNKGGY WVFNITIRKL LFSRKRDTIY TRSRRGFSLR  1320
MSKLLSVGGS SLKWSKSIEK NSKRANEEAT LAVAAVQKKK RDQKNAPCVV TGTKSRGNFS  1380
RERIFRIGSV RYKMDPTRRT LQRISDVEPS CSPTSNSENN VKKSYVPRRL VIGNDEYVRI  1440
GNGNQLIRDP KKRTRALASE KVRWSLHTAR LRLARKSKYC QFFTRFGKCN KDDGKCPYIH  1500
DHSKIAVCTK YLSGSCTSVN CKLTHKVIPE RMQDCSYYQQ GLCSNRSCPY RHVNVNANAS  1560
ICEGFLKGYC DDGNECRKKH TYVCPKYEET GICPQGSQCK LHHPKKRSKG IKRKSSRGQK  1620
NANGRYFGSR SVETTAVSEK LHLKNSDDIF NLEGKFTDYI SLDISDEEAG ETVDPMMEEI  1680
TVCASDVEAT DLNEQIKPIC LVQPSHHRTF SDH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207217RERERERERER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA756855